Science Research Weekly

• Ancient dental calculus reveals oral microbiome shifts associated with lifestyle and disease in Great Britain
• The Third Fermi Large Area Telescope Catalog of Gamma-Ray Pulsars
• A metagenomic view of novel microbial and metabolic diversity found within the deep terrestrial biosphere at DeMMO: A microbial observatory in South Dakota, USA
• Spatial autocorrelation
• Getting started with theme()
• GitHub: FriendsDontLetFriends
• NIH: Advanced Development and Validation of Emerging Molecular and Cellular Analysis Technologies for Basic and Clinical Cancer Research

R Packages:

• ivo.table: Pretty Contingency Tables and Frequency Tables
• aloom: All Leave-One-Out Models
• revert: Reversion Mutation Identifier for Sequencing Data

Stable trapping of multiple proteins at physiological conditions using nanoscale chambers with macromolecular gates

Rhabdamoeba marina is a heterotrophic relative of chlorarachnid algae

Identifying keystone species in microbial communities using deep learning

concepts in linear regression to know before learning multilevel models

Logarithmic Regression in R: A Step-by-Step Guide with Prediction Intervals

R lubridate: How To Efficiently Work With Dates and Times in R

NHLBI: Program Project Applications

R Packages:

semidist: Measure Dependence Between Categorical and Continuous Variables

ggScatRidges: Scatter Plot Combined with Ridgelines in 'ggplot2'

air: AI Assistant to Write and Understand R Code

• Vision-controlled jetting for composite systems and robots
• Minutes-duration optical flares with supernova luminosities
• Fluorogenic Photo-Crosslinking of Glycan-Binding Protein Recognition Using a Fluorinated Azido-Coumarin Fucoside
• A drug-like molecule engages nuclear hormone receptor DAF-12/FXR to regulate mitophagy and extend lifespan
• The R Journal Volume 15/2
• Tip: Avoid alphabetical order for a categorical axis in a graph
• the difference between standard deviation and standard error
• How to Change Fonts in ggplot2 with Google Fonts
• A classifier that's very accurate (and deep)
• Data Analysis in R for Becoming a Bioscientist
• GitHub: TIL
• NSF: Biocomputing through EnGINeering Organoid Intelligence

R Packages:

• cookiemonster: Your Friendly Solution to Managing Browser Cookies
• PAICE: Phylogeographic Analysis of Island Colonization Events
• BayesGmed: Bayesian Causal Mediation Analysis using 'Stan'

• Soft robotics informs how an early echinoderm moved
• Distinctive microfossil supports early Paleoproterozoic rise in complex cellular organisation
• CHARGED “MOLECULAR BEASTS” THE BASIS FOR NEW COMPOUNDS
• Simultaneous entry as an adaptation to virulence in a novel satellite-helper system infecting Streptomyces species
• Oxygen bounty for Earth-like exoplanets: spectra of Earth through the Phanerozoic
• A big step for little particle accelerators
• Join the Python Developers Survey 2023: Share and learn about the community!
• 4 ways to display an inset that contains statistics on a SAS graph
• R Shiny Modules: How to Create Your First R Shiny Module
• How to Make a Data Science Portfolio Website (in Under 15 Minutes with R)
• 365 Data Science courses 100% free until November 20
• Data Camp Free Week
• NIH: Exploratory Clinical Trial Grants in Arthritis and Musculoskeletal and Skin Diseases
• NSF: Incorporating Human Behavior in Epidemiological Models
• NSF: Designing Synthetic Cells Beyond the Bounds of Evolution

R Packages:

• qeML: Quick and Easy Machine Learning Tools
• Spectran: Visual and Non-Visual Spectral Analysis of Light
• SillyPutty: Silly Putty Clustering

• Moon-forming impactor as a source of Earth’s basal mantle anomalies
• Centenarian lifespans of three freshwater fish species in Arizona reveal the exceptional longevity of the buffalofishes (Ictiobus)
• Detection of the infrared aurora at Uranus with Keck-NIRSPEC
• [Rd] R 4.3.2 is released
• Bioconductor 3.18 Released
• Scanning QR codes in R
• Approaches to Calculating Number Needed to Treat (NNT) with Meta-Analysis
• How to Load SAS Files in R: Transitioning from SAS to R with Seamless Data Integration
• NOSI: Using Targeted Degradation of Protein and non-Protein Targets for the Development of Novel Anti-Infectives
• NOSI: Chronic Inflammation of the Oral Cavity - An Agent for Oral Mucosal Disease
• NASA: Established Program to Stimulate Competitive Research (EPSCoR)
• NASA: Transport Phenomena Research at the International Space Station to Benefit Life on Earth
• NASA: NSF/CASIS Collaboration on Tissue Engineering and Mechanobiology on the International Space Station (ISS) to Benefit Life on Earth

R Packages:

• portion: Extracting a Data Portion
• Rnanoflann: Extremely Fast Nearest Neighbor Search
• SurvSparse: Survival Analysis with Sparse Longitudinal Covariates
• tRigon: Toolbox for Integrative Pathomics Analysis
• defineOptions: Define and Parse Command Line Options

• A Simultaneous Dual-site Technosignature Search Using International LOFAR Stations
• Genetically engineered Lactobacillus paracasei rescues colonic angiotensin converting enzyme 2 (ACE2) and attenuates hypertension in female Ace2 knock out rats
• A rhythmically pulsing leaf-spring DNA-origami nanoengine that drives a passive follower
• Geophysical evidence for an enriched molten silicate layer above Mars’s core
• Weighted Trajectory Analysis and Application to Clinical Outcome Assessment
• mixed models with crossed random factors
• How to Create a Bubble Chart in R using ggplot2
• Unearthing Golden Nuggets of Data: A RegEx Treasure Hunt in R
• 3 (actually 4) neat R functions
• GitHub: MuJoCo
• NIH: Development of Candidate Radiation/Nuclear Medical Countermeasures

R Packages:

• envvar: Make Working with Environment Variables Easier and More Consistent
• multitool: Run Multiverse Style Analyses
• oeli: Utilities for Developing Data Science Software
• mvhtests: Multivariate Hypothesis Tests
• eglhmm: Extended Generalised Linear Hidden Markov Models

• Performance of polygenic risk scores in screening, prediction, and risk stratification: secondary analysis of data in the Polygenic Score Catalog
• A Canvas of Spatially Arranged DNA Strands that Can Produce 24-bit Color Depth
• VirB, a key transcriptional regulator of Shigella virulence, requires a CTP ligand for its regulatory activities
• Single-cell DNA methylation and 3D genome architecture in the human brain
• Rogue nanowaves: A route to film rupture
• Coherent nanophotonic electron accelerator
• Journal of Statistical Software, Volume 107
• R 4.3.2 scheduled for October 31
• Mastering Interaction Plots in R: Unveiling Hidden Relationships
• Mastering the Art of Drawing Circles in Plots with R
• Releasing collapse 2.0: Blazing Fast Joins, Reshaping, and Enhanced R
• Unlocking the Power of Functional Programming in R (Part 1)
• A brand new GAMLj
• NOSI: Research Projects to Develop Oncoaging Models for Cancer Research

R Packages:

• eglhmm: Extended Generalized Linear Hidden Markov Models
• maplegend: Legends for Maps
• ZIBR: A Zero-Inflated Beta Random Effect Model
• qrlabelr: Generate Machine- And Human-Readable Plot Labels for Experiments
• MicrobiomeSurv: Biomarker Validation for Microbiome-Based Survival Classification and Prediction
• tinycodet: A Few Functions to Help in your Coding Etiquette

• Dendritic deformation modes in additive manufacturing revealed by operando x-ray diffraction
• Plate tectonic cross-roads: Reconstructing the Panthalassa-Neotethys Junction Region from Philippine Sea Plate and Australasian oceans and orogens
• Unraveling the functional dark matter through global metagenomics
• GMM Estimators for Binary Spatial Models in R
• Approximate functions by using Taylor series and rational functions
• Horizontal Legends in Base R
• Little useless-useful R functions – Function for faster reading with Bionic Reading
• GitHub: Paperless-ngx
• NHGRI: Advancing Genomic Medicine Research through Small Businesses
• NSF: Cognitive Neuroscience
• MSA: Kenneth Downing Postdoctoral Scholarship

R Packages:

• MicrobiomeSurv: Biomarker Validation for Microbiome-Based Survival Classification and Prediction
• samplesizeestimator: Calculate Sample Size for Various Scenarios
• galamm: Generalized Additive Latent and Mixed Models
• wikkitidy: Tidy Analysis of Wikipedia
• mineSweepR: Mine Sweeper Game

• A New Tissue-Agnostic Microfluidic Device to model physiology and disease: The Lattice Platform
• Nanomechanoelectrical approach to highly sensitive and specific label-free DNA detection
• Genomic characterization of rare earth binding by Shewanella oneidensis
• piRNA processing by a trimeric Schlafen-domain nuclease
• A Candida auris–specific adhesin, Scf1, governs surface association, colonization, and virulence
• Use design matrices to analysis subgroups in SAS IML
• Python 3.12.0 (final) now available
• Top 9 R packages (that every Data Scientist must know)
• Creating typewriter-styled maps in {ggplot2}
• Plotting Decision Trees in R with rpart and rpart.plot
• NIH: Cancer Research Education Grants Program - Courses for Skills Development
• NIH: Cancer Research Education Grants Program - Research Experiences
• NIH: Cancer Research Education Grants Program - Curriculum or Methods Development
• NSF: Trailblazer Engineering Impact Award
• ACSM: Research & Program Grants

R Packages:

• conformalpvalue: Computes Conformal p-Values
• speccurvieR: Easy, Fast, and Pretty Specification Curve Analysis
• syntenyPlotteR: Genome Synteny Visualization
• h3r: Hexagonal Hierarchical Geospatial Indexing System

• Observation of the effect of gravity on the motion of antimatter
• Harnessing water fleas for water reclamation: A nature-based tertiary wastewater treatment technology
• Delivery of Nematicides Using TMGMV-Derived Spherical Nanoparticles
• A split and inducible adenine base editor for precise in vivo base editing
• Extreme salt-resisting multistage solar distillation with thermohaline convection
• Journal of Statistical Software: Volume 107
• R Journal: Volume 15/1
• 13+ Future Programming Languages 2025-2030 Coders Must Know
• 100+ CGR Micro Project Topics: Unleashing Your Creativity
• How NOT to format time series data
• Mastering Data Visualization with ggplot2: A Guide to Using facet_grid()
• GitHub: Omnivore
• NIAID: Fc-Dependent Mechanisms of Antibody-Mediated Killing
• NSF: Ideas Lab: Personalized Engineering Learning

R Packages:

• Colossus: Risk Model Regression and Analysis with Complex Non-Linear Models
• cloneRate: Estimate Growth Rates from Phylogenetic Trees
• statConfR: Models of Decision Confidence and Metacognition
• chem.databases: Collection of 3 Chemical Databases from Public Sources

• Bisphosphonate conjugation enhances the bone-specificity of NELL-1-based systemic therapy for spaceflight-induced bone loss in mice
• Longitudinal genomic surveillance of carriage and transmission of Clostridioides difficile in an intensive care unit
• Gravity aspects for Mars
• Identification and genomic analysis of temperate Halomonas bacteriophage vB_HmeY_H4907 from the surface sediment of the Mariana Trench at a depth of 8,900 m
• Use PROC SGPLOT to embed a graph inside another graph
• six common types of statistical contrasts
• An Educational Stroll With Stan – Part 1
• Histograms with Two or More Variables in R
• MD: Pediatric Scientist Development Program

R Packages:

• LearnSL: Learn Supervised Classification Methods Through Examples and Code
• clustlearn: Learn Clustering Techniques Through Examples and Code

• Molecularly confined hydration in thermoresponsive hydrogels for efficient atmospheric water harvesting
• Dynamic lipidome alterations associated with human health, disease and ageing
• Analysis of Keller Cones for RF Imaging
• Video of RF Imaging
• An interfacial solar evaporation enabled autonomous double-layered vertical floating solar sea farm
• Extracellular electron transfer pathways to enhance the electroactivity of modified Escherichia coli
• Biofilm formation of Pseudomonas aeruginosa in spaceflight is minimized on lubricant impregnated surfaces
• Senolytic therapy in mild Alzheimer’s disease: a phase 1 feasibility trial
• Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
• Solar-powered shape-changing origami microfliers
• Video of Origami microfliers
• Journal of Statistical Software: Volume 107
• Multi-threading on JuliaHub
• The SG annotation macros in SAS
• Appsilon’s Top 10 Sessions to Check Out at posit::conf 2023
• Creating Population Pyramid Plots in R with ggplot2
• Plotting SVM Decision Boundaries with e1071 in R
• GitHub: TidyTuesday
• NIH: Center for Exposome Research Coordination to Accelerate Precision Environmental Health
• AAN: Clinical Research Training Scholarship in Parkinson's Disease

R Packages:

• DebiasInfer: Efficient Inference on High-Dimensional Linear Model with Missing Outcomes
• biosampleR: Biodiversity Index Calculation and Bootstrap Confidence Interval Estimation
• CohortAlgebra: Use of Interval Algebra to Create New Cohort(s) from Existing Cohorts
• moodlequizR: Easily Create Fully Randomized 'Moodle' Test Questions
• epiCleanr: A Tidy Solution for Epidemiological Data

• A super-massive Neptune-sized planet
• A SAM analogue-utilizing ribozyme for site-specific RNA alkylation in living cells
• The Rhabdodontidae (Dinosauria, Ornithischia), an enigmatic dinosaur group endemic to the Late Cretaceous European Archipelago
• Estimating Sepsis Incidence Using Administrative Data and Clinical Medical Record Review
• Model data from published summary statistics
• Grants For R Language Infrastructure Projects Available Now!
• When to use Jitter
• Insights on R Package Quality and Validation for Clinical Trials
• Bioconductor 3.18 Release Schedule
• NOSI: Quantum Sensing in Biomedical Applications
• NOSI: Research Supplements to Promote Re-Entry, Re-integration into, and Re-training in Health-Related Research Careers
• NIH: HEAL Initiative
• NSF: Postdoctoral Research Fellowships in Biology

R Packages:

• karyotapR: DNA Copy Number Analysis for Genome-Wide Tapestri Panels
• phantSEM: Create Phantom Variables in Structural Equation Models for Sensitivity Analyses
• juicedown: 'juice' + 'markdown': Convert 'R Markdown' into 'HTML' with Inline Styles
• procs: Recreates Some 'SAS®' Procedures in 'R'
• webmap: Create Interactive Web Maps Using 'The National Map' Services

• Delayed gut microbiota maturation in the first year of life is a hallmark of pediatric allergic disease
• The early Cambrian Kylinxia zhangi and evolution of the arthropod head
• Apoptosis of Multi-Drug Resistant Candida Species on Microstructured Titanium Surfaces
• Exploring Relationships with Correlation Heatmaps in R
• Plotting Multiple Lines on a Graph in R: A Step-by-Step Guide
• 6 New books added to Big Book of R
• NIH: Research Tools for Difficult to Culture Eukaryotic Pathogens
• NIH: Early-stage Biomedical Data Repositories and Knowledgebases
• Gateway for Cancer Research: Integrative Program

R Packages:

• condensr: Academic Group Website Generator
• ruminate: A Pharmacometrics Data Transformation and Analysis Tool
• phylosem: Phylogenetic Structural Equation Model

• Increased hyaluronan by naked mole-rat Has2 improves healthspan in mice
• MIT engineers use kirigami to make ultrastrong, lightweight structures
• An antibiotic from an uncultured bacterium binds to an immutable target
• Vertebrate environmental DNA from leaf swabs
• JuliaHub Newsletter August 2023
• Bootstrap predicted means by using PROC GLMSELECT
• Creating template files with R
• Best Practices for Data Cleaning and Preprocessing
• NIH: Predoctoral to Postdoctoral Fellow Transition Award
• NIH: Research Projects to Enhance Applicability of Mammalian Models for Translational Research
• NSF: Ecology and Evolution of Infectious Diseases

R Packages:

• artpack: Creates Generative Art Data
• syllogi: Collection of Data Sets for Teaching Purposes
• rmass2: Repeated Measures with Attrition: Sample Sizes and Power Levels for 2 Groups
• scriptloc: Get the Location of the R Script that is Being Sourced/Executed

• Clinical efficacy of ONC201 in H3K27M-mutant diffuse midline gliomas is driven by disruption of integrated metabolic and epigenetic pathways
• Vertebrate ichnology and palaeoenvironmental associations of Alaska’s largest known dinosaur tracksite in the Cretaceous Cantwell Formation (Maastrichtian) of Denali National Park and Preserve
• Engineered bacteria detect tumor DNA
• Sustained wet–dry cycling on early Mars
• Add Unicode symbols and format text labels in SAS
• Plot confidence intervals for a regression model in SAS
• Bootstrap confidence intervals for the predicted mean in a regression model
• Mastering Data Visualization: A Guide to Harnessing the Power of R’s par() Function
• GitHub: katana
• NIH/NIA: R43/R44 REDI Award
• NIH/NIA: R41/R42 REDI Award
• NSF: Physics Investigator-Initiated Research Projects
• NSF: Smart Health and Biomedical Research in the Era of Artificial Intelligence and Advanced Data Science
• Air Force: Science and Technology Fellowship
• Marfan Foundation: Innovators Grants
• Million Dollar Bike Ride Pilot Grant Program
• AAI Intersect Fellowship Program
• AHA: AIREA
• McKnight: Scholar Award

R-packages:

• graposas: Graphical Approach Optimal Sample Size
• osmclass: Classify Open Street Map Features
• bulkreadr: The Ultimate Tool for Reading Data in Bulk
• handcodeR: Text Annotation App
• unicol: The Colors of your University

• The circadian clock of the bacterium B. subtilis evokes properties of complex, multicellular circadian systems
• Dual pathogenicity island transfer by piggybacking lateral transduction
• Structural underpinnings of mutation rate variations in the human genome
• Enhance Your Plots with the text() Function in R
• GitHub: Web-Dev-For-Beginners
• NIH: Music-based Interventions Toolkit for Brain Disorders of Aging
• NSF: Artic Research Opportunities
• AHA: Institutional Research Enhancement Award

R Packages:

• none

• A novel nematode species from the Siberian permafrost shares adaptive mechanisms for cryptobiotic survival with C. elegans dauer larva
• Exploring the relationship between social jetlag with gut microbial composition, diet and cardiometabolic health, in the ZOE PREDICT 1 cohort
• Biorenewable and circular polydiketoenamine plastics
• Greengenes2 unifies microbial data in a single reference tree
• SatRdays London 2023 – Recordings
• One Weird Trick to Make Ggplot2 Columns the Same Width
• Linear model and Transformations
• GitHub: ClickHouse
• NIH: Secondary Analysis and Integration of Existing Data to Elucidate Cancer Risk and Related Outcomes (R01)
• NIH: Secondary Analysis and Integration of Existing Data to Elucidate Cancer Risk and Related Outcomes (R21)
• NIH: A Consortium for Gut-Brain Communication in Parkinson’s Disease (U01)
• NIH: A Consortium for Gut-Brain Communication in Parkinson’s Disease (U24)
• McKnight Foundation: Neurobiology of Brain Disorders Award
• ASCO: Young Investigator Award

R Packages:

• none

• Size Dependence of the Bouncing Barrier in Protoplanetary Dust Growth
• Near-Infrared Fluorescent Biosensors Based on Covalent DNA Anchors
• Mining for a new class of fungal natural products: the evolution, diversity, and distribution of isocyanide synthase biosynthetic gene clusters
• what is a randomized complete block design?
• Simplify Your Code with R’s Powerful Functions: with() and within()
• 7 New books added to Big Book of R
• GitHub: Cal.com
• NOSI: Lymphatic System in Health and Disease
• NCI: Innovative Research in Cancer Nanotechnology

R Packages:

• MultiClassROC: ROC Curves for Multi-Class Analysis
• UpDown: Detecting Group Disturbances from Longitudinal Observations

• DNA-origami-directed virus capsid polymorphism
• Petrodactyle wellnhoferi gen. et sp. nov.: A new and large ctenochasmatid pterosaur from the Late Jurassic of Germany
• Autonomous healing of fatigue cracks via cold welding
• An extraordinary fossil captures the struggle for existence during the Mesozoic
• The massive relic galaxy NGC 1277 is dark matter deficient
• Dates and location for useR! 2024
• JuliaHub Newsletter July 2023
• Standardize regression coefficients for models that include categorical variables
• GitHub: lazydocker
• GitHub: how-web-works
• NSF: Focused Research Hubs in Theoretical Physics

R Packages:

• badgen: Fast and Simple Badge Generator
• forestly: Interactive Forest Plot
• quickcode: A Compilation of Some Frequently Used R Functions

• Convergent evolution of skim feeding in baleen whales
• At-Home Saliva Sampling in Healthy Adults Using CandyCollect, a Lollipop-Inspired Device
• Microeukaryotic predators shape the wastewater microbiome
• The effects of board games on math skills in children attending prekindergarten and kindergarten: A systematic review
• Oncogene-like addiction to aneuploidy in human cancers
• A mid-Cambrian tunicate and the deep origin of the ascidiacean body plan
• Diverse organic-mineral associations in Jezero crater, Mars
• A biological camera that captures and stores images directly into DNA
• JWST early Universe observations and ΛCDM cosmology
• datasetR – R package for creating datasets
• Unveiling a New Era in Molecular Visualization: Introducing shiny.molstar for Large Molecular Structures Visualization in R
• Array Languages: R vs APL
• exercism
• HUD: Radon Testing and Mitigation Demonstration for Public Housing
• DOD: Toxic Exposures

R Packages:

• grpnet: Group Elastic Net Regularized GLM
• bbmix: Bayesian Model for Genotyping using RNA-Seq
• TOmicsVis: Transcriptome Visualization Process Scheme

• Remote detection of a lunar granitic batholith at Compton–Belkovich
• Metallic gels for conductive 3D and 4D printing
• Raptorial appendages of the Cambrian apex predator Anomalocaris canadensis are built for soft prey and speed
• Pattern selection by material aging: Modeling chemical gardens in two and three dimensions
• Virus-like transposons cross the species barrier and drive the evolution of genetic incompatibilities
• An Easy Way to Customize Your Shiny App Theme
• CheatSheet for coding in R, Python and Julia
• GitHub: Tkinter-Designer
• NIH: Preclinical Proof of Concept Studies for Rare Diseases
• NIH: Cellular and Molecular Biology of Complex Brain Disorders (R01)
• NIH: Cellular and Molecular Biology of Complex Brain Disorders (R21)
• Jonathan F. Reichert Foundation: ALPhA Immersions Support
• AABB Foundation: Early-Career Scientific Research Grants Program

R Packages:

• esem: Exploratory Structural Equation Modeling ESEM
• protHMM: Protein Feature Extraction from Profile Hidden Markov Models
• ZooID: Load, Segment and Classify Zooplankton Images

• Genomes of the extinct Bachman’s warbler show high divergence and no evidence of admixture with other extant Vermivora warblers
• A long-duration gamma-ray burst of dynamical origin from the nucleus of an ancient galaxy
• BioAutoMATED: An end-to-end automated machine learning tool for explanation and design of biological sequences
• Therapeutic efficacy of 211At-radiolabeled 2,6-diisopropylphenyl azide in mouse models of human lung cancer
• A Dual-Gated Structures for Lossless Ion Manipulations-Ion Mobility Orbitrap Mass Spectrometry Platform for Combined Ultra-High-Resolution Molecular Analysis
• Newsletter June 2023 - Julia 2023 User & Developer Survey - Closing Soon!
• two types of effect size statistic: standardized and unstandardized
• May 2023: “Top 40” New CRAN Packages
• ggplotting power curves from simr package
• GitHub: Svelte
• NOSI: Advancing Biomedical Research in Pulmonary Non-Tuberculous Mycobacterial Infections
• NOSI: Using Targeted Degradation of Protein and non-Protein Targets for the Development of Novel Anti-Infectives
• North Carolina Biotechnology Center Translational Research Grant
• American Roentgen Ray Society Scholarship
• BWF Career Awards at the Scientific Interface

R Packages:

• New CRAN packages that deserve to bask in the light of a new day:
• flashlighttext: Flashlight Text R Interface
• GRCRegression: Modified Poisson Regression of Grouped and Right-Censored Counts
• otargen: Access Open Target Genetics
• tree3d: 3D Tree Models

• Legacy Effects of Phytoremediation on Plant-Associated Prokaryotic Communities in Remediated Subarctic Soil Historically Contaminated with Petroleum Hydrocarbons
• Vectipelta barretti, a new ankylosaurian dinosaur from the Lower Cretaceous Wessex Formation of the Isle of Wight, UK
• Super-resolved trajectory-derived nanoclustering analysis using spatiotemporal indexing
• Hydrogen and dark oxygen drive microbial productivity in diverse groundwater ecosystems
• Pangolin-inspired untethered magnetic robot for on-demand biomedical heating applications
• R 4.3.1 is released
• Python 3.12.0 beta 3 released
• Summary of Julia Plotting Packages
• Use built-in ODS templates to display SAS tables
• Unleashing the Power of Sampling in R: Exploring the Versatile sample() Function
• GitHub: CodeEdit
• NHGRI: Informatics Tools for the Pangenome
• NHGRI: High Quality Reference Genomes
• NSF: Cellular and Biochemical Engineering
• NSF: Engineering of Biomedical Systems

R Packages:

• ppRep: Analysis of Replication Studies using Power Priors
• CIfinder: Estimate the Confidence Intervals for Predictive Values
• pivotea: Create Pivot Table Easily

• Detection of phosphates originating from Enceladus’s ocean
• Major Genetic Risk Factors for Dupuytren's Disease Are Inherited From Neandertals
• Achievement of ion temperatures in excess of 100 million degrees Kelvin in the compact high-field spherical tokamak ST40
• the effect size: the most difficult step in calculating sample size estimates
• Mojo Programming Language: A Beginner’s Guide
• Top 37+ Exciting Website Project Ideas to Ignite Creativity
• Bayesian structural equation model tutorial
• GitHub: astro
• NIH: Novel Mechanism Research on Neuropsychiatric Symptoms (NPS) in Alzheimer's Dementia
• NOSI: Applications of Data Science in Translational Dental, Oral, and Craniofacial Research

R Packages:

• DDPM: Data Sets for Discrete Probability Models
• boxly: Interactive Box Plot
• ggaligner: Visualizing Sequence Alignment by Generating Publication-Ready Plots
• pcutils: Some Useful Functions for Statistics and Visualization
• STAREG: An Empirical Bayes Approach for Replicability Analysis Across Two Studies
• tdata: Prepare Your Time-Series Data for Further Analysis
• epiworldR: Fast Agent-Based Epi Models
• GGoutlieR: Identify Individuals with Unusual Geo-Genetic Patterns

• Air-quality networks collect environmental DNA with the potential to measure biodiversity at continental scales
• Buckling Metamaterials for Extreme Vibration Damping
• Candidatus Alkanophaga archaea from Guaymas Basin hydrothermal vent sediment oxidize petroleum alkanes
• Isolated tooth reveals hidden spinosaurid dinosaur diversity in the British Wealden Supergroup (Lower Cretaceous)
• Lost world of complex life and the late rise of the eukaryotic crown
• Bioinks for Space Missions: The Influence of Long-Term Storage of Alginate-Methylcellulose-Based Bioinks on Printability as well as Cell Viability and Function
• Python 3.11.4, 3.10.12, 3.9.17, 3.8.17, 3.7.17, and 3.12.0 beta 2 are now available
• Visualize the Spearman rank correlation
• Update to Data Science Software Popularity
• Why GLMs should be a priority when teaching statistics
• How to improve your storytelling with R
• Simulating confounders, colliders and mediators by @ellis2013nz
• NIAID: New Innovators Awards
• USDA: 2023 SPSD Collaborative Soil Science Research
• NSF: Small Business Innovation Research/ Small Business Technology Transfer Program Phase I

R Packages:

• ami: Checks for Various Computing Environments
• rtms: R Toolkit for Mass Spectrometry
• gptzeror: Identify Text Written by Large Language Models using 'GPTZero'

• Enhanced rare-earth separation with a metal-sensitive lanmodulin dimer
• Characterization of just one atom using synchrotron X-rays
• Independent rediploidization masks shared whole genome duplication in the sturgeon-paddlefish ancestor
• R 4.3.1 scheduled for June 16
• The Python Language Summit 2023
• Julia Newsletter May 2023
• Embedding any code anywhere into SAS programs
• Demystifying Regular Expressions: A Programmer’s Guide for Beginners
• Introducing standby
• April 2023: “Top 40” New CRAN Packages
• ‘ggplot2’ Palettes From Tintin Comic Books
• GitHub: grype
• CIDR: High Throughput Sequencing and Genotyping Resource Access
• AAS-EPD Mini-Grant Program
• Gateway for Cancer Research

R packages:

• intrinsicKappa: Sample Size Planning Based on Intrinsic Kappa Value
• WeibullR.plotly: Interactive Weibull Probability Plots with 'WeibullR'
• dmetatools: Computational Tools for Meta-Analysis of Diagnostic Accuracy Test
• HDMFA: High-Dimensional Matrix Factor Analysis
• siftr: Fuzzily Search a Dataframe to Find Relevant Columns

• A platform for distributed production of synthetic nitrated proteins in live bacteria
• Stelladens mysteriosus: A Strange New Mosasaurid (Squamata) from the Maastrichtian (Late Cretaceous) of Morocco
• High-throughput printing of combinatorial materials from aerosols
• Bubble-Based Microrobots with Rapid Circular Motions for Epithelial Pinning and Drug Delivery
• Generic Air-Gen Effect in Nanoporous Materials for Sustainable Energy Harvesting from Air Humidity
• Macromolecular Engineering: From Precise Macromolecular Inks to 3D Printed Microstructures
• Python 3.12.0 beta 1 released
• How does PROC SGPLOT position labels for polygons?
• Unleashing brilliance: 3 innovative solutions to real-world problems at the SAS Hackathon
• the difference between clustered, longitudinal, and repeated measures data
• 35+ Amazing Biochemistry Project Topics To Boost Your Skills
• Why learning Python is hard (but important) for Data Scientists that use R
• R Consortium-Funded R Package “matter” Helps Solve Larger-Than-Memory Issues
• GitHub: rembg
• NSF: Geoinformatics
• DOD: Neurofibromatosis New Investigator Award
• 2023 Neonatal Research Initiative - Request for Proposals
• Hirshberg Foundation Seed Grant Program
• 2023 Kaggle AI Report
• HuBMAP - Hacking the Human Vasculature

R packages:

• BIDistances: Bioinformatic Distances
• cstidy: Helpful Functions for Cleaning Surveillance Data
• ggautomap: Create Maps from a Column of Place Names
• JUMP: Replicability Analysis of High-Throughput Experiments

• Inadvertent human genomic bycatch and intentional capture raise beneficial applications and ethical concerns with environmental DNA
• A global phylogeny of butterflies reveals their evolutionary history, ancestral hosts and biogeographic origins
• Multiwavelength observations of the extraordinary accretion event AT2021lwx
• Chitin utilization by marine picocyanobacteria and the evolution of a planktonic lifestyle
• Ancient gene linkages support ctenophores as sister to other animals
• The sizes of life
• Julia 1.9 Highlights
• SAS inventors celebrate 54 new patents
• Poisson HMM: The model of count time series
• freeCodeCamp
• Awesome Remote Job
• DOD: Melanoma Idea Award
• NIA: Analyses of CALERIE Datasets and Biospecimens
• Burrough Wellcome Fund: PATH
• ACMG Foundation: Training Awards and Fellowships

R packages:

• BIDistances: Bioinformatic Distances
• rchemo: Dimension Reduction, Regression and Discrimination for Chemometrics
• ggflowchart: Flowcharts with 'ggplot2'

• BacterAI maps microbial metabolism without prior knowledge
• Thermal and chemical properties of the eROSITA bubbles from Suzaku observations
• Spatially resolved imaging of the inner Fomalhaut disk using JWST/MIRI
• bootUR: An R Package for Bootstrap Unit Root Tests
• How good is an AI chatbot at SAS programming?
• a post-hoc test for kruskal-wallis
• Build an R package: the workshop
• RADAR AI Edition: DataCamp’s Free Summit on How Generative AI is Transforming Data Science
• GitHub: siyuan
• NCATS: Awards Supporting Cutting-Edge Technologies for Translational Science
• NIH: Sex Differences in Radiation Research
• NSF: BioFoundries
• NASA: Early Career Investigator Program in Earth Science
• CRI: Irvington Postdoctoral Fellowship
• Carnegie: Postdoctoral Fellowship

R packages:

• ggflowchart: Flowcharts with 'ggplot2'
• DataSetsUni: A Collection of Univariate Data Sets
• BayesMortalityPlus: Bayesian Mortality Modelling
• tidygam: Tidy Prediction and Plotting of Generalised Additive Models
• ZIPG: Zero-Inflated Poisson-Gamma Regression
• speedglm: Fitting Linear and Generalized Linear Models to Large Data Sets
• survstan: Fitting Survival Regression Models via 'Stan'

• An infrared transient from a star engulfing a planet
• Exciton-Condensate-Like Amplification of Energy Transport in Light Harvesting
• Visualizing the disordered nuclear transport machinery in situ
• Building a genome-based understanding of bacterial pH preferences
• Zoonomia
• A genomic timescale for placental mammal evolution
• disaggregation: An R Package for Bayesian Spatial Disaggregation Modeling
• Bring your expertise to SAS Explore 2023
• Computer Science courses with video lectures
• How to create a clickable world cloud with wordcloud2 and Shiny
• March 2023: “Top 40” New CRAN Packages
• NOSI: Pre-Clinical Research on Gene Therapies for Rare Genetic Neurodevelopmental Disorders

R packages:

• HybridMicrobiomes: Analysis of Host-Associated Microbiomes from Hybrid Organisms
• BayesRepDesign: Bayesian Design of Replication Studies
• cartographer: Turn Place Names into Map Data
• mixedBayes: Bayesian Longitudinal Regularized Quantile Mixed Model

• A ring-like accretion structure in M87 connecting its black hole and jet
• Galaxy interactions are the dominant trigger for local type 2 quasars
• CRISPR-Cas-amplified urinary biomarkers for multiplexed and portable cancer diagnostics
• Simple optical nanomotion method for single-bacterium viability and antibiotic response testing
• Diel variation in insect-dominated temperate pond soundscapes and guidelines for survey design
• A versatile jellyfish-like robotic platform for effective underwater propulsion and manipulation
• Fungal biotechnology: From yesterday to tomorrow
• R 4.3.0 is released
• how to pick an r package
• GitHub: Buzz
• GitHub: tabby
• NIA: Small Research Grant for Next Gen. AD/ADRD Research
• NSF: Infrastructure Capacity for Biological Research
• NSF: Infrastructure Innovation for Biological Research
• HFSP: Long-Term Fellowships
• CAP: Global Pathology Development Grant

R-packages:

• jmBIG: Joint Longitudinal and Survival Model for Big Data
• mlmpower: Power Analysis and Data Simulation for Multilevel Models
• gtranslate: Translate Between Different Languages
• mldr.resampling: Resampling Algorithms for Multi-Label Datasets
• geessbin: Modified Generalized Estimating Equations for Binary Outcome
• survivalSL: Super Learner for Survival Prediction from Censored Data

• Specific host metabolite and gut microbiome alterations are associated with bone loss during spaceflight
• Moisture-Enabled Germination of Heat-Activated Bacillus Endospores for Rapid and Practical Bioelectricity Generation: Toward Portable, Storable Bacteria-Powered Biobatteries
• Direct imaging and astrometric detection of a gas giant planet orbiting an accelerating star
• Application of Equal Local Levels to Improve Q-Q Plot Testing Bands with R Package qqconf
• The joy of sets
• what is the mann-whitney u test?
• Shiny User Adoption Fails: 9 Reasons Why Nobody Uses Your App
• DHHS: Data Integration and Statistical Analysis Methods
• NOSI: RNA Modifications in Cancer Biology
• NOSI: Synthetic Biology for Biomedical Applications
• MS: Biostatistics/Informatics Junior Faculty Award

R-packages:

• GLMMselect: Bayesian Model Selection for Generalized Linear Mixed Models
• kdry: K's "Don't Repeat Yourself"-Collection
• asmbPLS: Predicting and Classifying Patient Phenotypes with Multi-Omics Data

• Obligate chimerism in male yellow crazy ants
• Large-scale invasion of unicellular eukaryotic genomes by integrating DNA viruses
• Expanding known viral diversity in the healthy infant gut
• Make “Solar System” Plots With {ggsolar}
• Awesome Python
• Microsoft PowerToys
• NOSI: Assembling the Addiction Organelle Interactome
• NIAID: Mechanisms of Neurotropic Virus-mediated Disease

R-packages:

• fakir: Generate Fake Datasets for Prototyping and Teaching
• betaNB: Bootstrap for Regression Effect Sizes
• npclust: Nonparametric Tests for Incomplete Clustered Data
• SQI: Soil Quality Index

• Evidence for wastewaters as environments where mobile antibiotic resistance genes emerge
• A Morphological and Spatial Analysis of Volcanoes on Venus
• Multiple mutations in the Nav1.4 sodium channel of New Guinean toxic birds provide autoresistance to deadly batrachotoxin
• A social niche breadth score reveals niche range strategies of generalists and specialists
• intRinsic: An R Package for Model-Based Estimation of the Intrinsic Dimension of a Dataset
• Python 3.11.3, 3.10.11 and 3.12 alpha 7 are now available
• Why Use Rank Correlation?
• Weak or strong? How to interpret a Spearman or Kendall correlation
• awesome-flipperzero
• ChatGPT: Made this Shiny App in 10 Minutes
• 6 new books added to Big Book of R
• DoD: Peer Reviewed Cancer, Idea Award

R-packages:

• lessSEM: Non-Smooth Regularization for Structural Equation Models
• AICcPermanova: Model Selection of PERMANOVA Models Using AICc
• rtlr: Print Right-to-Left Languages Correctly
• softbib: Software Bibliographies for R Projects
• Mmcsd: Modeling Complex Longitudinal Data in a Quick and Easy Way
• rrandvec: Generate Random Vectors Whose Components Sum Up to One

• Genome-wide subcellular protein map for the flagellate parasite Trypanosoma brucei
• Artificial organelles for sustainable chemical energy conversion and production in artificial cells: Artificial mitochondrion and chloroplasts
• Tomography of ultrarelativistic nuclei with polarized photon-gluon collisions
• Core cellular and tissue-specific mechanisms enable desiccation tolerance in Craterostigma
• Chatting and cheating: Ensuring academic integrity in the era of ChatGPT
• Journal of Statistical Software Volume 106
• Quick PyCon US Update
• JuliaHub & Julia Ranked #12 in the Debut of Redpoint’s Open-source Top 25
• Simpson's paradox and confounding variables
• 15+ Awesome Javascript Projects For Beginners In 2023
• February 2023: “Top 40” New CRAN Packages
• REDCapDM: a package to access and manage REDCap data
• Top five(ish) sources of ecological data
• Build your own X
• DOD: Young Investigator Program
• NHGRI: Maintenance and Integration of the ENCODE Data Resource
• NIDCR: Research Grants for Analyses of Existing Genomics Data
• NIDCR: Small Research Grants for Analyses of Existing Genomics Data

R Packages:

• lenght: Allow Misspellings of Length Function
• c2z: A Reference Manager
• ecan: Ecological Analysis and Visualization
• Vicus: Exploiting Local Structures to Improve Network-Based Analysis of Biological Data

• Parallelized computational 3D video microscopy of freely moving organisms at multiple gigapixels per second
• Natural and engineered mediators of desiccation tolerance stabilize Human Blood Clotting Factor VIII in a dry state
• Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
• Electrochemical degradation of PFOA and its common alternatives: Assessment of key parameters, roles of active species, and transformation pathway
• Mother-to-infant microbiota transmission and infant microbiota development across multiple body sites
• Journal of Statistical Software Volume 106
• R 4.3.0 scheduled for April 21
• dummy coding in spss glm–more on fixed factors, covariates, and reference groups
• Partial correlation: controlling for confounding variables
• Pynecone
• A suite of tools to scrape and parse search engine results
• NIH: Molecular Transducers of Physical Activity Bioinformatics Center
• NIH: Instrumentation Grant Program for Resource-Limited Institutions
• NSF: Synthesis Center for Understanding Organismal Resilience
• ACS: Postdoctoral Fellowships
• HFSP: Cross-Disciplinary Fellowships
• IDSA: IDea Incubator

R Packages:

• crayons: Color Palettes from Crayon Boxes
• baseq: Basic Sequence Processing Tool for Biological Data
• reappraised: Statistical Tools for Assessing Publication Integrity of Groups of Trials
• ridgregextra: Ridge Regression Parameter Estimation

• Optical tweezers throw and catch single atoms
• The connectome of an insect brain
• A hydrogenotrophic Sulfurimonas is globally abundant in deep-sea oxygen-saturated hydrothermal plumes
• A self-healing electrically conductive organogel composite
• Engineering breakthrough in softbotics
• Mix-and-match kit could enable astronauts to build a menagerie of lunar exploration bots
• The Young Supernova Experiment Data Release 1 (YSE DR1)
• Observation of a critical charge mode in a strange metal
• 6 predictions for AI and data in health care and life sciences
• Use the metalog distribution in SAS
• R 4.2.3 is released
• ShinyConf 2022 – Short Recap
• Statistical Rethinking (2023 Edition)
• Introduction to data analysis with {Statgarten}.
• WebR IS HERE!
• NIH: Director’s Pioneer Award Program
• NIH: Entry-Level Modules for Training the Genomics Research Workforce
• NIH: Enhancement of external environmental exposure assessment for cancer epidemiology research
• Falk Medical Research Trust: Catalyst Awards Program
• CRI: Immuno-Informatics Postdoctoral Fellowship
• ACS: Early Career Postdoctoral-Faculty Bridge Grant

Other Articles:

• LEXpander: Applying colexification networks to automated lexicon expansion
• Surface changes observed on a Venusian volcano during the Magellan mission
• Why is Pumas-QSP So Fast? Some Insights Into Differentiable Simulation Performance

R-packages:

• pharmaverse: Navigate 'Pharmaverse'
• toweranNA: A Method for Handling Missing Values in Prediction Applications
• waspasR: Tool Kit to Implement a W.A.S.P.A.S. Based Multi-Criteria Decision Analysis Solution

• Novel friction stabilization technology for surface damage conditions using machine learning
• Crevasse refreezing and signatures of retreat observed at Kamb Ice Stream grounding zone
• Apoptotic cell fragments locally activate tingible body macrophages in the germinal center
• Dynamic interplay between RPL3- and RPL3L-containing ribosomes modulates mitochondrial activity in the mammalian heart
• An abundant sea anemone from the Carboniferous Mazon Creek Lagerstӓtte, USA
• Paleontologists flip the script on anemone fossils
• Python 3.12.0 alpha 6 released
• The R Journal Volume 14/4
• 7 New books added to Big Book of R
• What I’ve learned making an .epub Ebook with Quarto
• DOD: DEPSoR - Research Collaboration
• DOD: Ovarian Cancer CTR Award
• DOD: Ovarian Cancer Clinical Trial Award
• NHBLI: Research Project Grants in Valvular Heart Disease
• NHBLI: Integrative Omics Analysis of NHLBI TOPMed Data
• HHS: Small R01s for Clinical Trials Targeting Diseases for NIDDK
• Biogen: Sponsorships
• AHR: Strategically Focused Research Networks
• CRI: Technology Impact Award
• IAFNS: Live Dietary Microbe Intake and Health Outcomes
• NC Life Sciences: Flash Grants

R-packages:

• BayesFluxR: Implementation of Bayesian Neural Networks
• lorem: Generate Lorem Ipsum Text
• HDRFA: High-Dimensional Robust Factor Analysis
• guildai: Track Machine Learning Experiments
• aihuman: Experimental Evaluation of Algorithm-Assisted Human Decision-Making

• Energy-shaping control of a muscular octopus arm moving in three dimensions
• Injury primes mutation-bearing astrocytes for dedifferentiation in later life
• Origin of the propatagium in non-avian dinosaurs
• Effectiveness of physical activity interventions for improving depression, anxiety and distress: an overview of systematic reviews
• MoBIE: a Fiji plugin for sharing and exploration of multi-modal cloud-hosted big image data
• 3D printing of living structural biocomposites
• Network expansion of genetic associations defines a pleiotropy map of human cell biology
• A shape-shifting nuclease unravels structured RNA
• Systematics and Phylogenetic Interrelationships of the Enigmatic Late Jurassic Shark Protospinax annectans Woodward
• Vitamin D supplementation and incident dementia: Effects of sex, APOE, and baseline cognitive status
• JuliaHub Newsletter February 2023
• Bioconductor Conference 2023
• PhyloPic
• R 4.2.3
• R-universe
• January 2023: “Top 40” New CRAN Packages
• Happy 23rd Birthday R!
• NIH: Translational Research in Maternal and Pediatric Pharmacology and Therapeutics (R01)
• NIH: Translational Research in Maternal and Pediatric Pharmacology and Therapeutics (R21)
• NIH: Genomic Community Resources (U24)
• CDC: Clinical and Applied Research Strategies for the Prevention and Control of Fungal Diseases
• USDA: USDA-ARS Postdoctoral Fellowship in Spatial Statistics for Continental-Scale Soil Health Modeling
• TSC Alliance: 2023 Grant Cycle
• CHEST: COPD Research Grant
• CHEST: Young Investigator Research Grant

R-packages:

• aihuman: Experimental Evaluation of Algorithm-Assisted Human Decision-Making
• reactCheckbox: Checkbox Group Input for 'Shiny'
• treediff: Testing Differences Between Families of Trees
• rutledge: Real-Time PCR Data Sets by Rutledge et al. (2004)

• Scalable selective absorber with quasiperiodic nanostructure for low-grade solar energy harvesting
• Toward surface-enhanced Raman scattering using electroless substrate for trace arsenic detection and speciation
• Site-specific encoding of photoactivity and photoreactivity into antibody fragments
• Complete Genome Sequence of the Lysogenic Pseudomonas Bacteriophage Fyn8
• A broad-spectrum synthetic antibiotic that does not evoke bacterial resistance
• Discovery of massive early galaxies defies prior understanding of the universe
• Julia and Python better together
• DOD: Multidisciplinary Research Program of the University Research Initiative (MURI)
• DOD: Lung Cancer, Concept Award
• DOD: Lung Cancer, Translational Research Award
• DOD: Lung Cancer, Idea Development Award
• DOD: Lung Cancer, Career Development Award
• NASA: Early Career Faculty
• FDA: Natural History and Biomarker Studies of Rare Neurodegenerative Diseases
• LCRF: Leading Edge Research Grant Program
• UMDF: Research Grant Program

R-packages:

• dataMojo: Reshape Data Table
• ggmapinset: Add Inset Panels to Maps
• bubbleHeatmap: Produces 'bubbleHeatmap' Plots for Visualising Metabolomics Data
• gmmsslm: Semi-Supervised Gaussian Mixture Model with a Missing-Data Mechanism
• rWCVP: Generating Summaries, Reports and Plots from the World Checklist of Vascular Plants

• Framework for the architecture of exoplanetary systems
• RNA's 'joints' play key role in our gene expression
• Help! Our Neptune-sized exoplanets are missing
• The ins and outs of an undergrad-run journal
• the difference between the bernoulli and binomial distributions
• Top 9+ Interesting R Project Ideas To Try In 2023
• 10 Tidyverse functions that might save your day
• Putting the top 100 R packages into a GIF
• NSF: Plant Genome Research Program
• NSF: Computer and Information Science and Enginering Core Programs
• NIH: HEAL Initative
• NIH: Aging Research
• NIH: IDeA Networks of Biomedical Research Excellence (INBRE)
• DOD: Ovarian Cancer Early-Career Investigator Award
• DOD: Ovarian Cancer Investigator-Initiated Research Award
• DOD: Ovarian Cancer Pilot Award
• NASA: Research Opportunities in Space and Earth Science (ROSES) 2023

R-packages

• HanStat: Package for Easy Interpretation of Statistical Methods
• hidecan: Create HIDECAN Plots for Visualising Genome-Wide Association Studies and Differential Expression Results
• dndR: Dungeons Dragons Functions for Players and Dungeon Masters

• The virtual microbiome: A computational framework to evaluate microbiome analyses
• A dense ring of the trans-Neptunian object Quaoar outside its Roche limit
• 3D Printing of Self-Assembling Nanofibrous Multidomain Peptide Hydrogels
• This one-atom chemical reaction could transform drug discovery
• logitr: Fast Estimation of Multinomial and Mixed Logit Models with Preference Space and Willingness-to-Pay Space Utility Parameterizations
• Python 3.11.2, Python 3.10.10 and 3.12.0 alpha 5 are available
• How to use Git to share SAS programs
• Top 10 errors in R and how to fix them
• NIH: Using Multimodal Biomarkers to Differentially Diagnose ADRDs for Clinical Trials
• NSF: Accelerating Research Translation
• Saving Tiny Hearts Society: Research Grants

R packages

• deFit: Fitting Differential Equations to Time Series Data
• synMicrodata: Synthetic Microdata Generator
• animate: A Web-Based Graphics Device for Animated Visualisations
• formatBibtex: Format BibTeX Entries and Files

• This groundbreaking biomaterial heals tissues from the inside out
• A high-mass X-ray binary descended from an ultra-stripped supernova
• Mining metatranscriptomes reveals a vast world of viroid-like circular RNAs
• Tracking the Evolution of an Ocean Within Mimas Using the Herschel Impact Basin
• Journal of Statistical Software Volume 105
• Annual Julia Growth Statistics - January 2023
• Tips for organizing your R code
• December 2022: “Top 40” New CRAN Packages
• NASA: Exobiology- Living Systems Science
• NIH: Data Harmonization, Curation and Secondary Analysis of Existing Clinical Datasets
• DOD: Peer Reviewed Medical, Discovery Award
• DE-FOA: 2023 Exploratory Research for Extreme Scale Science
• NIH NOSI: Development of Functional Assay Sites to Evaluate Candidate -Omics Variants Associated with Heart, Lung, Blood, or Sleep Disease
• NIH NOSI: Revision Applications to add a Curation and Informatics Component to existing Animal and Biological Material Resource Centers

R-packages

• hexFinder: Find Hex Logos for CRAN Packages
• vvsculptor: Apply Manipulations to Data Frames
• findPackage: Find 'CRAN' Package by Topic

• Global patterns of diversity and metabolism of microbial communities in deep-sea hydrothermal vent deposits
• Chem-map profiles drug binding to chromatin in cells
• Study offers first glimpse of how many suffer from previously unknown illness
• Molecular mechanism of topoisomerase poisoning by the peptide antibiotic albicidin
• Triassic stem caecilian supports dissorophoid origin of living amphibians
• The R Journal Volume 14/3
• Star Map with R
• Show all data in the background of your faceted ggplot
• Fitting robust non-Gaussian models in Stan and R-INLA
• JuliaHub 6.0 Features Released
• Kaggle Competition: IceCube - Neutrinos in Deep Ice
• NSF: Molecular Foundations for Biotechnology
• NSF: Expanding Capacity in Quantum Information Science and Engineering
• DE: Scientific Machine Learning for Complex Systems
• AFOSR: Fiscal Year 2023 Science, Technology, Engineering and Mathematics (STEM) Program

R-packages

• neatR: Neat Data for Presentation
• polyglotr: Translate Text
• clarify: Simulation-Based Inference for Regression Models
• poolHelper: Simulates Pooled Sequencing Genetic Data
• vDiveR: Visualization of Viral Protein Sequence Diversity Dynamics

• The Early Microbial Colonizers of a Short-Lived Volcanic Island in the Kingdom of Tonga
• A high-quality Ixodes scapularis genome advances tick science
• Haplotype-aware pantranscriptome analyses using spliced pangenome graphs
• The molecular evolution of genes previously associated with large sizes reveals possible pathways to cetacean gigantism
• The Dark Energy Camera Plane Survey 2 (DECaPS2): More Sky, Less Bias, and Better Uncertainties
• Volume 105 of the Journal of Statistical Software
• 12 blog posts from 2022 that deserve a second look
• Top 15 Stunning Arduino Project Ideas For 2023
• Some R Conferences for 2023
• Web scraping in R
• Imputation in R: Top 3 Ways for Imputing Missing Data
• FDA: Fellowship in Understanding Pathogenesis and Improving Detection of Flaviviruses
• NSF: Future Manufacturing
• NSF: Division of Environmental Biology
• NSF: Division of Molecular and Cellular Biosciences Core Programs
• NSF: Division of Integrative Organismal Systems Core Programs
• NIH NOSI: Research on the Etiology, Early Detection, Screening and Prevention of Early-Onset Colorectal Cancer
• NIH NOSI: Computational and Statistical Methods to Enhance Discovery from Health Data

R packages:

• ggplate: Create Layout Plots of Biological Culture Plates and Microplates
• glmmrOptim: Approximate Optimal Experimental Designs Using Generalised Linear Mixed Models
• shiny.benchmark: Benchmark the Performance of 'shiny' Applications
• blindreview: Blind Review Using Forward Search Procedures
• metabias: Meta-Analysis for Within-Study and/or Across-Study Biases
• evoTS: Analyses of Evolutionary Time-Series
• OssaNMA: Optimal Sample Size and Allocation with a Network Meta-Analysis

• Are most published research findings false in a continuous universe?
• Principal component analysis
• A no-free-lunch theorem for multitask learning
• JuliaHub
• Signal-to-noise ratio and statistical tests
• Large Enough Sample Condition
• Top 11 Interesting Machine Learning Project Ideas For 2023
• Code longevity of the R programming language
• {drawCell} – R package and Shiny app for drawing cell structures

R-packages:

• colorRamp2: Generate Color Mapping Functions
• rworkflows: Test, Document, Containerise, and Deploy R Packages
• MetChem: Chemical Structural Similarity Analysis
• panelsummary: Create Publication-Ready Regression Tables with Panels
• arf: Adversarial Random Forests

• Quantifying uncertainty of machine learning methods for loss given default
• Evaluating the performance of memory type logarithmic estimators using simple random sampling
• A fast kernel independence test for cluster-correlated data
• Autoencoders for sample size estimation for fully connected neural network classifiers
• [R-pkgs] onetime 0.1.0: Run Code Only Once
• 🚧 WIP 🚧 From Julia to BQN
• Using SAS to score a test
• Using the cspade action to find frequent gene sequences
• The easygoing relationship between computer scientists and null hypothesis significance testing
• Top 11+ Coding Projects for Beginners (2023 Edition)
• Gosling: Interactive Genomics Charts in R Shiny
• Gosling Main Page

R-packages:

• POMS:  Phylogenetic Organization of Metagenomic Signals
• macroBiome: A Tool for Mapping the Distribution of the Biomes and Bioclimate
• reservr: Fit Distributions and Neural Networks to Censored and Truncated Data
• NPCox: Nonparametric and Semiparametric Proportional Hazards Model